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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jonathan Walters | 15th | Dan Fedorka | 16th | 13th |
| First Basemen | Mike Poe | Tied for 9th | Sean Rios | 6th | 5th |
| Second Basemen | Neil Hottman | 2nd | Jordan Thomas | 4th | 1st |
| Third Basemen | Jonathan Gonzalez | 4th | Matt McKenzie | Tied for 13th | 2nd |
| Shortstops | Danny Rodriguez | 8th | Troy Cull | 3rd | 2nd |
| Left Fielders | Marty Jenkins | 14th | Ron Banfield | 4th | 4th |
| Center Fielders | Josh Green | 1st | Fernando Mejicanos | 13th | 1st |
| Right Fielders | Tied for 17th | David Deyo | Tied for 12th | Tied for 20th | |
| Starting Pitchers | Omar Brown | 11th | Ricardo Barba | 2nd | 6th |
| Relievers | Jason Nearing | 22nd | Perry Cowen | 20th | 23rd |
| Closers | Jason Nearing | 22nd | Perry Cowen | 20th | 22nd |
